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Here, we aligned sequencing data from ChIP-seq and other genomic technologies to a build of the mouse genome containing a single rDNA repeat.
The number of serpins varies widely between species, with the mouse genome containing 64, compared to 35 in the human.
To analyze mouse rDNA by ChIP-seq, we constructed a build of the mouse genome containing a single copy of the mouse rDNA repeat.
To enable characterisation of H3K4me1 occupancy at the GFP transgene, a subset of 1x10 reads were selected from each dataset and mapped to a mouse genome containing the sequence of the GFP transgene as a separate chromosome.
In particular, we have identified three new loci in the mouse genome containing several genes specifically expressed in the oocyte, and two loci containing genes specifically expressed in male and female germ cells, which may thus be called "germ cell loci".
An example of a genome browser view of the text2genome mappings for a region of the mouse genome containing the tumor necrosis factor (Tnf) gene is shown in Figure 2. Overall, 79.3% of articles with sequences (27 632/34 828) lead to a single best species prediction that is based on hits to a best matching genomic region (99.3%, 27 452/27 632) and/or a best matching gene (40.0%, 9935/27 632).
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Our data demonstrate that, in NPCs, TRIM28 controls the rare copies of env-containing MMERVK10C elements, which are most likely to be the youngest ones, raising the possibility that these recent invaders of the mouse genome contain cis-acting genomic elements that allow them to escape DNA methylation in NPCs.
The mouse genome contains several subfamilies of L1 elements, defined by differences in their monomer sequences.
The mouse genome contains two insulin genes, Ins1 (GeneID: 16333) and Ins2 (GeneID: 16334).
The C57BL/6 mouse genome contains two rae-1 genes, rae-1δ and rae-1ε encoding two different proteins.
The mouse genome contains a single copy of the Geminin gene, which is composed of seven exons.
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Justyna Jupowicz-Kozak
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