Sentence examples for mouse genome corresponding from inspiring English sources
The region of the mouse genome corresponding to the MIR element, according to the UCSC genome-genome alignment, is the complement strand of hg18 chr13:9,634, 994-9, 635, 139.
Variants from each of these species were transposed to mouse genome NCBIM38/Mm10 using corresponding UCSC Chain alignments.
The purpose of this parameter was to investigate how the differences between a (human or mouse) genome and the corresponding reference genome could affect read alignment results.
Reads that passed quality control (more than 90%% bases had less than 1%% sequencing error; no ambiguous bases) were aligned to the mouse genome (Mus_musculus.GRCm.38.72) with corresponding gene model annotation (Mus_musculus.GRCm38.72.gtf) by TopHat 2.0.6 [ 16].
From all genes in the mouse genome, genes that have corresponding entries in the Affymetrix mouse430 2 GeneChip are considered for further analysis.
In order to identify local (cis-) eQTL and distant (trans-) eQTL we mapped the probe sets (Affymetrix Mouse 430 2.0) to the corresponding genomic locations (NCBI Mouse Genome Build m37.1).
To eliminate these, we manually compared our dataset with the mouse genome to see if a corresponding gene pair (or more copies) existed.
To compare the co-occurrence of bidirectional promoters in the human and mouse genomes, we mapped human genes regulated by bidirectional promoters to the mouse genome and assessed whether the corresponding mouse gene also formed a bidirectional promoter with its 5′ neighbor.
In addition to the MSC arrays generated in our lab, we also analyzed other 486 Affymetrix Mouse Genome 430A, 430B and 430 2.0 arrays corresponding to 6 murine tissues (brain, n = 90; heart n = 73; kidney n = 21; liver n = 72; and skeletal muscle n = 58).
More precisely, we call Bh the human-mouse breakpoint located on the human genome and Bm1 and Bm2 their corresponding breakpoints on the mouse genome.
Microarray slides contained approximately 33.000 oligonucleotides corresponding to the whole mouse genome (AECOM, USA, http://microarray1k.aecom.yu.edu/).aecom.yu.edu/
