Sentence examples for minimum sequence length from inspiring English sources

From the previous sections, to accommodate two users, the minimum sequence length is.

with ProAssembler default settings (match size = 25, minimum match percentage = 80, match spacing 150, minimum sequence length = 100, gap penalty = 0, gap length penalty = 0.70, and maximum mismatch end bases = 15).

We always chose to search within the reference barcode dataset (i.e. validated subset of the full database with a minimum sequence length of 500 bp and containing only those species represented by three or more individuals showing less than 2% sequence divergence) when possible.

Sequences were binned according to barcode using the 'Initial Process' tool of the Ribosomal Database Project (RDP) Pyrosequencing Pipeline (http://pyro.cme.msu.edu/) [53] with default parameters (which included the removal of sequences containing at least one ambiguous nucleotide), except for the minimum sequence length, which was set to 300 bp.

The remaining 1037 sequences were assembled into clusters (≥two ESTs) and singletons (one EST) based on the following criteria: sequence match size of 20 bp, minimum match percentage of 85%, 0.00 gap opening penalty, 0.7 gap length penalty, and minimum sequence length of 70 bp.

These datasets were then assembled using the SeqMan Pro assembler of the Lasergene software package v8.0.2 (DNASTAR, Madison USA) with the following program parameters: match size, 50bp; minimum match percentage, 80%; minimum sequence length, 40 bp; gap length penalty, 0.70 and maximum mismatch end bases, 15.

For these networks, the standard deviations of the minimum sequence lengths and run time are also shown in Tables  4 and 5.

Tables  4 and 5 show the minimum sequence lengths and run time required for two different accuracy values, given by the aforementioned "Norm 2" that measures the average difference of all the entries in two matrices.

These BLAST searches were also performed using an expect value cutoff of 1 × 10-5 and a minimum sequence match length of 50 nt.

Incremental de novo assembly analysis was performed with a parameter setting requiring a minimum sequence overlap length of 40 nt, a minimum overlap identity of 90% and using 16 CPU cores.

The de novo assembly from MIRA results in 33222 contigs, which were passed to CAP3 to get a more robust assembly, with a minimum sequence overlap length of 40 bases and an identity threshold of 90%.