Sentence examples for minimum sequence similarity from inspiring English sources
This approach is based on the idea that looking for similar regions consists of grouping sequences that share some minimum sequence similarity over a specified minimum length.
Minimum sequence similarity threshold was specified in terms of percent identity (-S parameter) and varied between 10 and 80 with step size 10.
Sequences were globally aligned with Shuffle-LAGAN (Brudno et al. 2003) and the minimum sequence similarity was set to 50%.
All SNP markers obtained were physically localized in the scaffolds of the cassava draft genome sequence (www.phytozome.com), based on minimum sequence similarity of 89%.
These constraints are defined in the form of thresholds that limit total number of errors, number of consecutive errors that can appear in the fragment and minimum sequence similarity required for each k-mer of the fragment.
Illumina reads from SD and SC samples were mapped to their respective reference assembly using CLC Genomics Workbench (read mapping parameters: minimum fraction length of read overlap = 0.5, minimum sequence similarity = 0.99).
In addition to biological tests on the protein of interest, two decision criteria have been proposed for the assessment of allergenic potential: identity of six or more contiguous amino acids, or minimum 35% sequence similarity over a window of 80 amino acids.
For I. calamistrata, I. cookei, I. godeyi, and I. maculata, the minimum interspecific sequence similarity was smaller than the maximum intraspecific sequence similarity.
The two key parameters of HomoClust are Simdown-th and Simup-th, which specify the minimum and maximum sequence similarity, respectively, used for evaluating the homogeneity of clusters in the first phase of the algorithm.
a Minimum proportion of sequence similarity based on BLAST's pairwise comparisons.
In Tax4Fun the linking of 16S rRNA gene sequences with the functional annotation of sequenced prokaryotic genomes is realized with a nearest neighbor identification based on a minimum 16S rRNA sequence similarity.
