Sentence examples for minimal sequence identity from inspiring English sources

The monomer fold, the arrangement of key residues in the active site, and the binding modes of PEP and Mn2+, all match those of the type I enzymes, and indicate a common ancestry for the type I and type II DAH7PSs, despite their minimal sequence identity.

Stimulation was comparable with three different plasmids of minimal sequence identity but similar size (Fig. 1F), indicating that the observed effect was unlikely due to specific sequences.

Clustering of homologous protein sequences was performed using BLASTCLUST [ 71]; we used 40% for the minimal sequence identity (-S option) and 75% for the minimal coverage by alignment (-L option) for at least one sequence (-b option).

drymifolia (unpublished data) using BLASTN (e-value 10−3) shows that 94.65 % of the transcripts had a significant hit against the genome (98%% of alignment length and minimal sequence identity of 90%% over the complete alignment).

The minimal sequence identity required to initiate recombination varies depending on the system and species being tested, but has been shown to involve 20 or fewer consecutive identical nucleotides for some types of recombination [ 46, 47].

Given a query protein, fast and flexible ProDy parsers are used to Blast search the PDB, retrieve the corresponding files (e.g. mutants, complexes or sequence homologs with user-defined minimal sequence identity) from the PDB FTP server and extract their coordinates and other relevant data.

Proteins between different organisms were defined as orthologs when (i) they displayed a minimal percentage sequence identity of 35%; (ii) they are each other's reciprocal best BLAST hit; and, (iii) the sequence identity was measured over at least 80% of the smallest protein.

Different Inc proteins share minimal primary sequence identity with each other or with other proteins in the databases making the assignment of specific function difficult.

Since the alignments which were taken to train the SVM are no longer than 400 nt, have a minimal pairwise sequence identity of 60% and contain maximal six sequences, test alignments were created which meet the same criteria.

The minimal length of sequence identity required to obtain efficient knock-down of green fluorescent protein expression in C. elegans has been experimentally determined to be ≥23 bp (Parrish et al. 2000).

The amino acid sequence of TbARG is only 24% identical with that of rat arginase I, and even less identical to those of arginases from other organisms, but this minimal level of sequence identity is sufficiently high to suggest a homologous three-dimensional structure.