Sentence examples for mutations were extracted from inspiring English sources

The effects of A112V (b), I138L (c), M253I (d), A81T (e), and A135T (f) mutations were extracted from the total plot (a) and shown by arrows.

The mutations were extracted using the Extractor of Mutations system (Extractor of Mutations, EMU) (20).

Information on non-synonymous and splicing site mutations were extracted from a pooled dataset.

We found that many of the missing mutations were extracted by EMU from tables and supplementary material.

Compared with 5,809 cancer predisposing germline variants from HGMD professional database [ 6], 43,364 recurrent cancer somatic mutations were extracted from COSMIC [ 34].

The data can be separated into two sets; one set of mutations is extracted from the COSMIC database, which is filtered for mutations more likely to be causal, and the rest of the data consists of mutations identified from large-scale sequencing efforts comparing tumor samples to matched normal samples of the same individual [23], [24].

In Table 4, we show that more mutations are extracted from full text in both databases.

Currently, mutations are extracted by using a simple threshold that separates them from sequencing errors – this is possible because KvarQ neglects bases that do not satisfy the minimum read quality requirements set by the user.

RNA from six IPSC lines from two healthy control subjects, two related patients carrying the P301L mutation in the MAPT gene and two patients carrying the MAPT N279K mutation, was extracted as described for RT-PCR at Day 0. Additionally, RNA was extracted from five of the IPSCs (two control, two P301L and one N279K) at Day 65.

The beta values for probes overlapping Illumina27 with significant loss of DNA methylation in KDM5C mutations cases were extracted for analysis.

The mutations (Database S1) were extracted from the TP53 database of the International Agency for Research on Cancer (IARC) (R10 update, July 200505, http://www-p53.iarc.fr/Somatic.html), with the addition of an Iranian series [11], [49].