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Many additional candidates exist that have been identified in the microarray studies described in Fig. 2, most notable amongst these is the miR-29 family, which has emerged in multiple studies.
The microarray studies described in this paper have been deposited in the NCI's Gene Expression Omnibus (GEO; [28]) and comply with the Minimal Information About a Microarray Experiment (MIAME) standard developed by the MGED Society (http://www.mged.org/Workgroups/MIAME/miame.html).html
The microarray studies described in this paper have been deposited in the NCI's Gene Expression Omnibus (GEO; [37]) and comply with the Minimal Information About a Microarray Experiment (MIAME) standard developed by the MGED Society (http://www.mged.org/Workgroups/MIAME/miame.html).html
Genes listed have been identified in microarray studies described in [ 3- 6, 8, 19].
The provisional annotation of genes is supported by expression data from microarray studies described in companion papers.
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The microarray study described herein primarily focused on the leaf transcriptomes of the potato cultivar White Lady (WT) and the TPS1 transgenic derivative (T2) exposed to drought stress in the form of 30% soil moisture content.
We downloaded from the PNAS website [ 37] the table number 10 containing the normalized and log2 transformed expression data from the microarray study described by Haqq et al [ 16].
Therefore, numerous comparable microarray studies are described with different outcomes (Nambiar et al, 2004).
A number of microarray studies have described that Wilms' tumours resemble cells from the developing kidney around the MET stage, and found a clear distinction between the WT1/β-catenin mutant and wild-type subsets of tumours (Corbin et al., 2009; Dekel et al., 2006; Fukuzawa et al., 2009; Gadd et al., 2012; Li et al., 2002, 2004).
In order to determine whether any of these sRNAs were negatively correlated with genes from the microarray study as described above, we first selected genes associated with sRNA clusters from the comparisons of LMg0 vs. LMg72, LMg0 vs. LMg96 and LMg72 vs. LMg96 that showed a ≥ 10-fold difference.
Using microarrays, a previous study described differential gene expression profiles of EHEC O157∶H7 in response to bacterial growth in the presence of erythrocytes [22].
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