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Predicted coding sequences (CDSs) were additionally manually evaluated using JGI's Quality Assurance pipeline (http://genomebiology.jgi-psf.org/Content/QApipeline.htm).htm
Individual microarray pairs were similarly manually evaluated using single array descriptors (time point, specific treatment for that sample).
Alignments identified as having low identities or containing sequences with different lengths were manually evaluated using the program BioEdit [ 56] and trimmed or otherwise edited if necessary.
Once all the orphan metabolites had been resolved, all remaining reactions that had evidence or annotation in MitoMiner for mitochondrial localisation were manually evaluated using the same procedure and added to the model where appropriate.
The 39 biological entities in this list were manually evaluated using the criteria that each entity must have a minimum of three references reported in the literature; notably, the bait list contained only one TF, SMAD3.
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Predicted coding sequences (CDSs) were manually analyzed and evaluated using an Integrated Microbial Genomes (IMG) annotation pipeline (http://img.jgi.doe.gov) [14].
Predicted coding sequences were manually analyzed and evaluated using an Integrated Microbial Genomes (IMG) annotation pipeline (http://img.jgi.doe.gov).gov
The atlas based recognition method was evaluated using three manually pre-segmented 3D CT data sets of the hip.
This Voronoï-based interpolation method was evaluated using simulated fMRI activation maps, manually generated on an anatomical MRI, and compared with a more standard approach where interpolation kernels were defined as local spheres of radius r = 3 or 5 mm.
Models were evaluated using PROSA (https://prosa.services.came.sbg.ac.at/prosa.php) manually inspected, analyzed, and figures were prepared using Pymol (http://pymol.sourceforge.net).net
Thus, the TEM diameters evaluated using Pebbles are consistently larger than the manually measured diameters and in excellent agreement with the diameters determined by SAXS.
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