New high output sequencing and high throughput genotyping platforms now mean it is possible to obtain cross specific genome sequence.
Sequencing genomic regions identifies a greater number of rare variants than that identified by genotyping platforms.
Genotyping platforms such as single nucleotide polymorphism (SNP) arrays are powerful tools to study genomic aberrations in cancer samples.
Screening panels based on genotyping platforms, such as OncoCarta?
Overall, accuracies of these prediction models were generally comparable across genotyping platforms.
Generally, genotyping platforms do not provide phase information for the marker genotypes.
In this way the confounding effects of genotyping platforms are avoided.
We then identified SNPs from genotyping platforms that fall directly within these gene boundaries.
Additionally, Vel genotyping could now be integrated into the current blood group genotyping platforms.
Information on genotyping platforms and imputation performance is summarized in Supplementary Material, Table S4.
Hence, the exact thresholds of individual GWAS slightly vary across genotyping platforms and sampling populations.
