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Exact(4)

We extended Theorem B to multiple sequences as follows.

Furthermore, all but a few of the spike-ins were represented by multiple sequences, as many as 22, whereas virtually all Trinity assemblies matched a unique spike-in control, or produced at most two matches.

Our algorithms prove to be effective and able to handle real data sets with multiple sequences, as well as biological patterns of interest, even when the latter display a high complexity (PROSITE signatures for example).

Turning to our second EST, the same reasoning may be applied, although we do not have access to multiple sequences as for [EX956386].

Similar(56)

All the results presented in previous sections remain true for d-multiple sequences as well.

Although, we prove our results only for triple sequences, but all these results remain true for d-multiple sequences as well.

DNA sequences are deposited in GenBank under the accession numbers found in Additional file 3. Multiple sequences alignments as well as phylogenetic trees are available in TreeBase, http://purl.org/phylo/treebase/phylows/study/TB2 S16652.

Furthermore, PATRIC offers continued updates to the annotation of rickettsial genes and proteins, and provides multiple sequence alignments as well as phylogenetic trees, when applicable, for each OG consisting of two to ten rickettsial taxa.

Similarly, we also computed the distributions of aLRT branch support estimated on the (true) branches of the model trees from the different multiple sequence alignments, as well as their average values.

To our knowledge, the fastest tool for such a task is RNAplex which recently was extended to use the information from multiple sequence alignments as well as pre-computed accessibility profiles.

Based on repeated and independent MS based protein identifications requiring multiple matched peptide sequences, as well as literature, 916 nuclear-encoded proteins were assigned with high confidence to the plastid, of which 86% had a predicted chloroplast transit peptide (cTP).

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