The phrase "abundant sequences as" is not correct and lacks clarity in written English.
It may be used in contexts discussing mathematical or biological sequences, but it requires additional context to be meaningful.
Example: "The study focused on abundant sequences as indicators of genetic diversity in the population."
Alternatives: "plentiful sequences as" or "numerous sequences as".
Of these, on average 68% mapped uniquely to University of California, Santa Cruz (UCSC) mm10 genome, 2.2% mapped non-uniquely, 4.6% were unmappable and 25% mapped to abundant sequences such as ribosomal RNA, mitochondrial or phiX sequences.
The S. coelicolor transcripts were divided into three abundance classes using the following intensity cut-offs: Intensity < 2000 as rare, 2000 < Intensity < 20000 as intermediate and >20000 as abundant sequences.
This methodology and interpretation emphasizes dominance of a sequence in a sample and disregards low abundant sequences (<5 10% in abundance) as intra-genomic variants that are not important [18], [29], [70].
In particular, long and dense microsatellite sequences as well as abundant WSSV-like sequences highlight the uniqueness of genome organization of penaeid shrimp from those of other taxa.
The former definition includes many of the OTUs with intermediate abundance and results in the classification of all sequences in the dataset into either rare or abundant, while the later only considers sequences that are truly present in very high levels in such a diverse ecosystem as abundant sequences.
For twenty-three miRNAs the most abundant sequence appeared as a different variant (isomiR) of the annotated miRNA, showing different length or a shift of the map position in the precursor (Additional file 2).
Another method involves Duplex-Specific Nuclease (DSN) degradation by the C0t-kinetics-based normalization method to deplete abundant sequences that reanneal quickly, such as those derived from the highly abundant rRNAs and tRNAs [ 17].
The affinity for the sequence included in the wheat gliadin 33-mer was not as high as for QQPFPQP, which is one of the most abundant sequences in secalin and hordein, similar to the 33-mer epitope in gliadin.
We detected this motif as one of the most abundant sequences in C. elegans [ 34], where it is mainly found in chromosomes I and II.
