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First, our DNA microarray was based on the genome sequence of strains NCTC 11168 and RM1221, and genes that are not present in these strains used to construct the microarray will not be detected.

The mouse CpG island microarray was based on previously described human CpG island microarrays [ 43– 43].

Because the microarray was based on NCBI GenBank (September 29 , 2004 and Z. mays UniGene Build 42 (July 23 , 2004 databases, each probe set was assigned to one EST accession number in GenBank.

Although the microarray was based on only about 1,500 unique genes [ 9, 15], many of the transcripts identified as differentially expressed in that study were also identified as potentially differentially expressed in this study.

The oligonucleotide microarray was based on the genome sequences of two lineage I, human outbreak-related E. coli O157 H7 strains, Sakai [ 9] and EDL933 [ 7] and the nonpathogenic E. coli K12 (MG1655) strain [ 26] and it was used to probe the genomes of a collection of E. coli O157 H7 strains.

The de novo development of a porcine skeletal muscle cDNA microarray was based on the use of two representative, directionally cloned λZAP-Express cDNA expression libraries; one derived from the back muscle of a 50-day-old foetus and the other from the gastrocnemius of a 3-day-old pig.

Similar(54)

This liquid microarray is based on the 5'UTR — the most highly conserved region of HCV — and the variable region NS5B sequence.

Additionally, miRNAs detected by microarray are based on reference sequences, however, the reference sequences are often not the dominant ones for some miRNAs, which might be another reason causing that discrepancy.

a Unigenes targeted in microarray were based on contigs assembled from ESTs generated in [ 40].

Primers for qPCR (Additional file 5) and oligonucleotide probes on the microarray were based on the same cDNA sequences.

On the other hand, microarray is based on the hybridization of specimen target strands onto the immobilized complementary probe strands.

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