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Exact(5)
When we increase the maximal gap size to five genes, the coverage of detected syntenies will become larger (Table 2).
We downloaded homolog information from Ensembl database [ 12] and run the program with different maximal gap size.
When the size of the CHS m is fixed, the smaller the maximal gap size is, the harder it can be observed.
The only important parameter that should be predefined is the maximal gap size (number of unmatched genes) allowed between two adjacent matched genes.
We find our result is highly consistent with Ensembl map when the maximal gap size is equal to one gene (Table 2).
Similar(54)
The maximal length of gap size between palindromic repeats was restricted to 3 kb.
Reads were aligned on the K. capsulata genome assembly using SOAP (Li et al. 2008) with a seed size of 12 bp and maximal mismatch and gap size of 2 and 3 nt per read, respectively.
Maximum backbone gap size is the maximum size authorized for a gap in sequences common to all mitogenomes.
The whole procedure is controlled by a set of parameters including gap size, which describes the maximal number of intervening, non-homologous genes tolerated between two homologous genes within a collinear segment, and a parameter determining to what extent the elements of a cluster fit on a diagonal line.
We optimize the nonlinear meta-surface by tuning the gap size between individual nanostructures within a unit cell for maximal nonlinear response.
In small gaps, realized survival was still maximal in gap centres, similar to Fig. 4A, but beyond a certain gap size (d > 25 cm at T = −8 °C), realized colonizer survival unexpectedly decreased in the entire gap.
Related(17)
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