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We also ask SOAPv2 to limit the possible gap size to at most 3 bp.
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However, it is worth noting that in spite of possible false gap sizes or misses of gap sizes in the above cases, their effect on the accepted/rejected gap sizes is statistically minimal, as the number of false ones plus misses was less than 5% of the total number of sample gap sizes collected (about 11,000 from 29 videos).
Since consistency declined relatively slowly with increasing gap size it is possible to use ContigMetrics with a threshold gap size that optimises the trade-off between haplotype size and accuracy for a particular application.
On average, the gap between a large prime p and the next prime number is approximately the natural logarithm of p, written log p. Number theorists long ago proved that there is no upper limit on how large the gap can grow, relative to log p. But they did not know what happened to the size of the smallest possible gap as the numbers became larger.
This band gap size is among the largest for all the possible 2-D PhCs reported until now.
OMACC selects from all possible contig paths the one whose length is closest to the gap size.
This implies, with the buckling structure of honeycomb lattice, a more textured topological properties are possible, including the prediction of a large gap QSH insulator [194, 195] with a gap size larger than 100 meV for room temperature applications [196].
The preliminary score for an extension is then the sum of these penalties over all gaps and all unitigs in the extension: (2) To produce a final score Pext for each possible extension, we add pext to a 'contig gap penalty', equal to λ times the largest gap size (denoted by g c in Fig. 4c) between two adjacent unitigs, i.e. the expected number of reads to fall in that gap.
This operation performs as many transformation as possible in order to reduce the gap (g) in the ALTF matrix, where the encoding complexity is proportional to the gap size.
Regarding gap size, it is very difficult and very error-prone to collect them if manual collection is at all possible [14].
Gap size may be further refined to accepted gap size or rejected gap size.
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