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The document transcriptions, captured as textual segments, have been manually analyzed by the history specialists who have made annotations using a dedicated annotation tool [32] and a custom-designed thesaurus.

Movies were then manually analyzed by eye to count flagella and to identify flagella waveforms.

Slides were manually analyzed by an independent pathologist in a blind manner, in order to check the morphology of labeled cells.

Each note was manually analyzed by two trained senior pharmacy students who did not participate in the development of the algorithm.

The video recordings were also manually analyzed by experts using the protocol developed in [ 20] and qualitative descriptors were assigned to each video.

Data were then further manually analyzed by eliminating proteins that were identified with less than a 20-fold detection increase over the controls based on the ProteomeDiscoverer software peptide peak area measurement, and by eliminating proteins with a sum of less than three spectral counts in the alk-16-treated samples.

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Data were manually analyzed (independently by two researchers) using a content analysis approach [ 14] which included, identification of recurring themes, categorization and interpretation.

All collected data were manually analyzed for abnormalities by an experienced observer blinded to genotype.

This training set is a body of text documents (often just single passages) that has been manually analyzed and annotated by domain experts to identify different entities occurring in them.

To identify evolutionary events within secretome genes only, all 695 trees analyzed by NOTUNG were manually analyzed to decipher evolutionary patterns.

The DNA fingerprints generated by PFGE were manually analyzed according to the criteria proposed by Tenover et al [27].

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