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The test set was manually curated by PRO curators without the use of the eFIP interface.
The annotated entries are linked to the RefSeq database in NCBI and UniProtKB as well as related literature for entries manually curated by our curators or the community.
This could be due to the fact that not all of mouse proteome has been manually curated by UniProtKB/Swiss-Prot curators and extreme caution is employed by UniProtKB/Swiss-Prot curators to ensure close to zero false positives.
We consider these annotated glycosylation sites as potential NGS, as they have been manually curated by UniProtKB/Swiss-Prot curators based on experimental evidence, similarity to experimentally-validated NGS in homologous proteins and/or in-depth sequence and functional analysis.
For this corpus, patents were automatically pre-annotated and then manually curated by at least one annotator group consisting of two to ten annotators.
The data are listed in the Dashboard using three font styles: bold for Valid Synonyms (manually curated by the team or algorithmically generated by systematic naming software), italicized for Good Synonyms (as a result of seeing consensus across a series of public databases), and normal font for Other Synonyms.
Considering that the quality and prediction capabilities of any method strongly depend on the amount and quality of the experimental data used for its development, the dataset used to model development was collected and manually curated by chemistry experts and it is available online on the ThermInfo database (http://www.therminfo.com).
The annotation was manually curated by the Haloferax community.
More precisely, network analysis consists in searching for direct and indirect interactions (known from the literature and manually curated by experts) between candidate genes and all other molecules (genes, gene products or small molecules) contained in IPKB.
Translocation data extracted from these databases were manually curated by removing missing and ambiguous data.
The remaining discrepancies were manually curated by the Bumann and Palsson groups following the jamboree meeting.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com