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Exact(9)
It becomes more computationally challenging when there are three or more gene trees.
It accepts as input a species tree in addition to one or more gene trees (or multiple sequence alignments).
The more gene trees we have, even when some of them are affected by different reticulation events, the more reliable the consensus network is.
The performance of gene tree consensus approaches, in particular the triple consensus approach, improves with the addition of more gene trees (Ewing et al. 2008).
The second element of the strategy is a search among candidate species trees, determining the minimum duplication score for each species tree relative to one or more gene trees that are assumed to be known [ 9, 10, 12, 33- 37].
The most parsimonious reconstruction, based on the paaC tree is that these two genes have been inserted into the cluster in B. pertussis Tohama I (see supplementary information for more gene trees).
Similar(51)
For both Q-imputation and Z-closure the counting filter (CF) has the desirable property that as the amount of data increases (more genes or more complete gene trees) the rate of both false positives and false negatives goes down.
To provide potential information in a GTP analysis, which fundamentally requires a rooted species tree and one or more rooted gene trees, the gene trees and the clusters used to construct them must consist of three or more sequences from three or more species.
TreeFix-DTL builds more accurate gene trees by addressing the problem of phylogenetic uncertainty.
We show that more accurate gene trees greatly improve the inference of evolutionary events.
Several complementary approaches exist to help build more accurate gene trees.
Related(20)
more gene polymorphisms
more gene targets
more gene duplications
more gene patents
more sequoia trees
more gene pairs
more gene sites
more gene alleles
more gene constructs
more gene products
more gene families
more gene deletions
more gene annotations
more gene loci
more gene members
more gene models
more gene modules
more gene transcripts
more gene copies
more gene segments
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