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MapMan terms related to cell wall organization and modifications in rice and Arabidopsis.
This review summarized the advances of both genetic networks and chromatin modifications in rice flowering time control, attempting to give a complete view of the genetic and epigenetic architecture in complex network of rice flowering pathways.
In the past two years, more and more molecular genetic studies gave the clues on the chromatin modification mechanism in rice flowering pathways, we summarize here most recent advances towards understanding of genetic networks and epigenetic chromatin modifications in rice flowering time control.
Pioneer studies of epigenetic modifications in rice, including DNA and histone methylation, using traditional methylated DNA enrichment method suggested possible functional roles of DNA methylation in rice [ 16, 17], but this approach is difficult to discriminate major genomic elements including promoters, gene bodies, transposons, and repeats.
Extracellular FAE activity was determined according to the method previously described by Kaur et al. [ 2] with some modifications in rice bran medium (100 g L−1 rice bran, 2.4 g L−1 maltose, 1 mL tween-80, pH-5.6) at 37°C for 24 h, using 1% v/v inoculum.
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Specific histone modification patterns in rice are associated with either heterochromatic or euchromatic regions or related to gene expression.
Our data will be helpful in understanding the relationships between allelic histone modifications and ASE in rice F1 hybrids.
Moreover, the histone H3K4me3 and symmetric DNA methylation at these genes was significantly reduced, suggesting an association between epigenetic modification and flowering in rice, but more research are required on this relationship (Li et al., 2011).
SEM images also confirmed the surface modifications in the pretreated rice straw.
These distinct differences in structure between grass and dicot pollen cell walls can explain why MapMan terms related to cell wall modifications are more enriched in rice divergent genes than in those of Arabidopsis (Cho and Kende, 1997; Sampedro et al. 2015).
Given the JmjC gene induced expression profiles and the histone methylation dynamics in the process of Xoo infection, it is rational for us to hypothesize that JmjCs-mediated histone modification plays important roles in rice BB resistance.
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