Sentence examples for maximum parsimony reconstruction from inspiring English sources

Because the maximum parsimony reconstruction of the root sequence may be biased toward the consensus state [25] and this could produce an artifact that incorrectly suggests an AA composition flow, we conducted an additional analysis with the simian lineage.

However, maximum parsimony reconstruction traced between 4,000 and 5,000 to the last eukaryotic common ancestor (LECA) 46– 46.

Maximum parsimony reconstruction of gene loss and gene gain events suggests extensive loss of genes from all functional categories in the Nanoarchaeota branch.

Maximum parsimony reconstruction from patterns of gap presence/absence has been used to show that gaps contain unexploited phylogenetic information (Dessimoz and Gil, 2010).

For H98 we applied the node support threshold of > 70 [ 67] to the Maximum Parsimony reconstruction presented in "Fig. 1" of [ 37], and we applied the same threshold for J04, to the Maximum Parsimony reconstruction presented in "Fig. 6" of [ 38].

A maximum parsimony reconstruction revealed substantial gene loss, from ∼3,000 genes in the common ancestor of Bacilli to ∼1,300 1,800 genes in various Lactobacilli species 34– 34.

When using amino acid sequences, various methods used for tree building (including distance-based neighbor joining and maximum parsimony reconstructions) provided a similar topology, with VN strains appearing ancestral, separate clusters including VD and IN sequences and finally a large group of ID sequence that seemed to have emerged more recently from a common ancestor (see figure 10A).

Maximum likelihood reconstructions of ancestral sequences and individual mutation events, provided by PAML, were used to cross-validate the maximum parsimony reconstructions.

To reconstruct the character evolution and groundplan features at each node, we used the "Trace Character History" option and performed maximum parsimony reconstructions of groundplans (select "Parsimony Ancestral States") for categorical characters under unordered states assumption.

Considering the lack of significant disagreement between the signals in the individual data set phylogenies and the confirmation of the Bayesian topology by Maximum Parsimony reconstructions, we regard the Bayesian concatenated data topology as a phylogenetic framework sufficiently robust for use in subsequent evolutionary hypotheses ("new" topology in Fig. 1).

Pathprinting allows a novel pathway-based phylogenetic approach for an unsupervised definition of this lineage by maximum-parsimony reconstruction using the discrete pathprint states.