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Paternity analysis was performed by a likelihood-based approach based on multilocus genotypes for all adult genets and offspring using CERVUS version 2.0 [ 41].
A broodstock management plan was designed for the world's biggest catfish, the critically endangered Mekong giant catfish (MGC), Pangasianodon gigas, based on multilocus genotypes of seven microsatellite loci.
They can assign either the individuals or a fraction of their genome to a number of clusters (K) based on multilocus genotypes.
Encouraging results were reported for population assignment procedures based on multilocus genotypes using Bayesian clustering methods (Pritchard et al. 2000) even if differentiation at most single markers is only moderate.
The development of cost-efficient genotyping methods based on high-throughput sequencing (Binladen et al. 2007) is likely to greatly improve possibilities to assign samples to heterogeneous, poorly differentiated groups based on multilocus genotypes at least for intensively studied "model" species.
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STRUCTURE uses Bayesian clustering method to assign individuals probabilistically to populations based on multilocus genotype data.
As the underlying data are based on multilocus microsatellite genotypes, an individual is characterized by a series of pairs of microsatellite repetitions at k loci with k = 9.
We combined different approaches based on multilocus microsatellite genotypes to reconstruct kinship among nestlings: estimates of relatedness coefficients, formulation of relationship-hypotheses, significance testing of alternative hypotheses, and maximum-likelihood sibship reconstruction techniques.
Additional strains of A. baumannii representing different genotypes were identified based on multilocus sequence typing (MLST) and other typing methods (Diancourt et al. 2010).
In addition, some weedy rice populations (e.g., HLJ-1, HLJ-2, and HLJ-3) showed a weak genetic substructure, as estimated by differences in correlation between paternal genotypes detected in progeny based on multilocus and single-locus measurement.
However, the variants belonged to genotypes that were distinct from 6B-III based on multilocus sequence typing (Table 2), suggesting that different clones are circulating in Malawi, and their phenotype is currently not known.
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