Sentence examples for source alignment from inspiring English sources

A recent study explored a range of common commercial and open source alignment tools (including BWA), and it reported that all those aligners failed to correctly align large indels, in agreement with our findings [ 23].

Small RNA sequencing tags were aligned against miRBase v15 pre-miRNA hairpins using miRNA-MATE, an open source alignment tool designed in our laboratory specifically for colour-space miRNA analysis (http://grimmond.imb.uq.edu.au/miRNA-MATE/; manuscript in preparation).

The MCL-NSOM includes a fiber launch with excitation source, alignment camera, and detection avalanche photodiode (APD), but can also easily accommodate user ancillary excitation and detection optics, further enhancing the versatility of this microscope.

When postprocessed by the permutation algorithm (FIVA-SS-P), only a tiny performance improvement was observed, the marginal gain in performance achieved by FIVA-SS-P relative to FIVA-SS indicates that the additional complexity of a postprocessing source alignment algorithm is not required for FIVA-SS.

The same analysis was repeated using the uncorrected RAxML-tree source alignment (see RAxML-Tree above).

We introduce NGSView (Next Generation Sequence View), an open source alignment editor and visualization tool, designed to address the issues mentioned above.

These steps include obtaining source alignments, generating indexes and compressing the source MAF files (when desired); the steps required to perform these actions are outlined at the Galaxy wiki, with direct links provided in the Supplementary Material.

While all of the tools are designed to work directly out-of-the-box for personal Galaxy installations, additional steps are required to provide a collection of pre-cached source alignments to the extraction tools.

Heuristics present another source of alignment errors especially for short queries, because only a few valid unique seeds may exist between the aligned sequences.

In order to identify de novo mutations, we consider that the best option is to maintain those sequences that match equally to more than one location, even though it could be a source of alignment errors due to homology between regions.

The large number of OTUs is potentially a biased source of alignment and phylogeny artefacts that could disrupt eukaryote monophyly.