Sentence examples for generating alignment from inspiring English sources

The raw reads for each sample were directly aligned to the Homo sapiens (hg38) reference genome assembly (hg38.fa) using tophat2 (version 2.0.13 62, generating alignment files in bam format.

Alignment : It facilitates users in generating alignment between users' query sequences or peptide sequences in ParaPep.

BS-Seeker2 is implemented in Python, integrating steps of building indexes from reference genomes, mapping reads from various formats (qseq, fastq, fasta and pure sequence), and generating alignment results (BAM, SAM or BS-Seeker format) and methylation calls (wiggle format), which can be directly loaded into a genome browser, such as IGV [ 18].

This task, common to any matching problem in computer science involves generating alignments between structured data in an automated fashion.

About: SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.

Lee et al. [167] presented a method for generating alignment-free cancelable fingerprint templates.

Generating alignments of rRNA genes can sometimes be challenging.

A range of gap penalty values were evaluated systematically for generating alignments.

The importance of finding biologically meaningful structural alignments has led to the intensive development of methods for generating alignments and evaluating their quality.

Nonetheless, integrating reads into alignments and phylogenetic trees of full-length gene sequences, or generating alignments and trees for reads alone, remains a major bioinformatics challenge.

Moreover, similarity-based approaches need enormous amount of time and computing resources for generating alignments of millions of metagenomic sequences with existing reference database sequences.