Sentence examples for generates alignment from inspiring English sources

The standard PHMM has three states (see Figure 1): match state M generating ungapped columns of the alignment, and two insert states I X and I Y, where I X generates alignment columns with a symbol from X aligned to a gap, and I Y generates columns with a symbol from Y aligned with a gap [ 1].

In addition, we have modelled the server output to enable comprehensive visualisation of the generated alignment and easy figure generation for publications.

The generated alignment was adjusted manually.

PS carried out additional sequence alignments and generated alignment figures.

SPHINX, in contrast, relies on sequence alignment and on the generated alignment parameters.

Alignment : It facilitates users in generating alignment between users' query sequences or peptide sequences in ParaPep.

Analysis of the generated alignment revealed a LTR of a retrotransposon.

AutoSNP uses the TGICL clustering tool [ 42] and CAP3 [ 43] with 98% identity criterion to generate alignment data.

The maximum coverages are driven by our use of coverage cutoffs in samtools [ 31] to generate alignment files.

Each generated alignment file can then be viewed individually or all alignment files (along with the original files) can be viewed simultaneously for comparison (Fig. 1B).

To enhance computational efficiency an approximate alignment method has been proposed to generate alignment candidates based on a fast translation-invariant rotational search [ 14, 15].