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An expression analysis of the genes in the lov1-4 mutants was conducted to confirm that LOV1 affects the expressions of CO and FT but not GI.

A pilot study of the feeding assay using wild-type and four eat mutants was conducted to determine the number of experimental replicates required for optimal statistical power.

Site-specific mutagenesis to obtain ComFB mutants was conducted using standard protocols using Pfu polymerase and two oligonucleotides for each mutation (oTS387/oTS388; oTS387/oTS388; oTS387/oTS388).

Screening for atocd-2/p5cs1-4 atocd-2/p5cs1-4 atocd-2/p5cs1-4ing primers given in Adoublenal file 1: Table S2 and those reported previously for p5cs1-4[ 14].

To determine if there were any alterations in the overall extractability of non-cellulosic glycan epitopes in the fpgs1- 1 mutant, glycome profiling of the cell wall material (alcohol insoluble residues; AIR) isolated from 35-day-old inflorescence stems of wild-type and fpgs1- 1 mutants was conducted (Fig.  4a).

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Protein expression and purification of these full length eNOS or nNOS mutants were conducted using the established procedure reported previously.

The expression and purification of SwH-NOX surface mutants were conducted using the same protocols as described above for the wild-type SwH-NOX protein.

Tranfections of T47D-Y cells with C587A-PR-B and PR-BmPro mutants were conducted as we previously described using vector concentrations which resulted in mutant PRs expression levels comparable to those present in T47D cells [ 5].

Microarray comparisons using RNA derived from sex determination hierarchy mutants were conducted with four replicates, with a dye-swap design; i.e. cDNA from each genotype contained incorporated Cy3-labeled dUTP in two experiments and contained incorporated Cy5-labeled dUTP in the other two experiments.

Temperature sensitive KOG1 mutant was conducted by mutagenic PCR.

Each experiment with wild-type BAP1 or F170I mutant was conducted twice.

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