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The phrase "multiple domain protein" is correct and can be used in written English.
It can be used when referring to a type of protein that has more than one structural domain. For example, "The protein we studied was a multiple domain protein with three distinct domains."
Exact(5)
As a multiple domain protein, CheA has an central role in our models.
Tap is a multiple domain protein composed of a Lotus domain and three Tudor domains.
CUB and Sushi multiple domain protein 1 (CSMD1) is a candidate tumour suppressor gene of unknown function.
A notable example within the Hymenoptera was N. vitripennis (parasitoid wasp), which contains a single 7DMA protein only, the most significantly expanded multiple domain protein aside from the previously described 8DMA protein of Tr. ca staneum (Fischer et al. 2008).
Both have homology to a large multiple domain protein in Wolbachia endosymbionts of Culex pipiens (e.g., WP_007302981.1) that has a latrotoxin domain at its C-terminus and numerous ankyrin repeats in the N-terminal half.
Similar(55)
Immunotoxins have been difficult to produce in eukaryotic systems, because due to their nature they kill eukaryotic cells, and production in bacteria has had limited success because prokaryotes are unable to fold multiple domain proteins.
There are two sub-families of pro-apoptotic proteins with one sub-family consisting of multiple domain proteins (Bax, Bak, Bod) and the other sub-family consisting of BH3 domain-only proteins (e.g., Bim, Bad, and Bik)(reviewed in [17]).
We find 11 new multiple domain proteins.
FPfam obtains less single-domain proteins and more multiple domain proteins than Pfam.
Overall functionality and efficiency of multiple domain proteins are affected by linker sequences.
We have also demonstrated that they necessarily present a scale-free topology that is robust to extensive domain shuffling of their multiple domain proteins.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com