Sentence examples for multiple domain alignment from inspiring English sources

Mutagrator is a software program which takes curated mutation data from the literature and displays it in the context of a master protein (chosen by the user) and a protein-registered TK multiple domain alignment.

Multiple domain alignments were performed using Multalin (http://multalin.toulouse.inra.fr) and Clustal-omega tool (v 1.2, http://www.clustal.org).org

This example highlights the power of ThreaDom in extracting correct domain information from distantly homologous threading alignments by combining multiple domain and alignment gap/insertion information.

When we performed a multiple SRCR domain alignment and phylogenetic tree analysis of CD163 proteins across multiple species, we found that the SRCR domain structure and organization of bovine CD163c-α (m-l-b-c-n-d-e-d') is most similar to CD163c-α from other eutherian mammalian species, such as human, chimpanzee, dog, and mouse and rat.

Input PDZ domain sequences were defined with 118 positions according to the PDZ domain multiple sequence alignment (Chen et al., 2008) and peptides were all of length 10AA.

J state allows aligning a sequence against the core of a profile HMM multiple times, which is called multi-domain alignment (domain duplication).

The Piwi mid domain multiple sequence alignment allows building and evaluation of homology-based structure models for Ago2.

To examine sequence features of these tomato bHLH domains, multiple sequence alignment of the 152 bHLH amino acid sequences were performed.

The positions of the bZIP domain were retrieved with PAL2NAL (http://www.bork.embl.de/pal2nal/) by converting a multiple sequence alignment of domain sequences and the corresponding gene sequences into a codon alignment, and then marked in red in the Supplementary Fig. S3.

First, we constructed a cluster-based, PDZ domain, multiple sequence alignments using MAFFT [ 38].

The initial clusters were further adjusted semi-manually based on multiple sequence alignments, domain compositions, pseudogene analysis and biological function of the proteins.