Sentence examples for mt genome assembly from inspiring English sources

Repeats in the mt genome assembly were detected using RepeatMasker in default mode (http://www.repeatmasker.org).org

Only simple repeats with fewer than 8 bp (∼1.49%) and low complexity (∼0.23%) were found in the mt genome assembly.

A complete mt genome assembly of Hydrodictyon reticulatum was not possible due to contamination and consequently low coverage.

Assembly of fragmented DNA in general is technically difficult, but physical link information from fosmid end sequencing greatly aided mt genome assembly.

From a phylogenetic tree constructed with the concatenated CDS of the 50 mt genomes, eight strains were chosen for de novo mt genome assembly.

> -wrap-foot> Finally, we verified that assembly errors in the form of contigs consisting of incorrectly ordered genes do not exist in any of our mt genome assemblies.

To remove reads derived from the MT genome before the assembly of the nuclear genome, we aligned all reads to the O. brumata MT genome and set aside pairs of which one mate or both aligned to the MT sequence.

Tr LG=white clover linkage group; Mt PM= Medicago truncatula genome assembly 3.0 pseudomolecule; Ref=cited reference; no hit=not found in M. truncatula databases and n/i=no intron in this gene.

As the two main reasons for insufficient assembly visual inspection of the mt genome alignments revealed insufficient read overlap and missed assemblies, even though identical and sufficient overlap was present.

> -wrap-foot> Since ascidian mt genomes are short (usually less than 15,000 bp) and were sequenced to high coverage, we expected the assembly programs to efficiently assemble the complete mt genome of each species into a single separate contig.

Raw reads of each mt genome were aligned to that of ICPA 2039 genome assembly in order to detect any sequence-level differences between them.