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In the BP category, the two most represented terms are "transcription" (1.82 % +/− 0.09 %) and "regulation of transcription" (1.81 % +/− 0.17 %).
In the molecular function ontology class, the most represented terms describe catalytic (33.3%) and hydrolase activity (20.0%).
The annotated GO terms in each cluster were fixed at level 2. The most represented terms in each cluster were mainly associated with metabolic and cellular processes.
The most represented terms among the 1,485 belonging to CC for plant organs were 'membrane' for fruits (32.9%) and roots (26.3%), and 'plastid' for seeds (30.4%), flowers (29.6%), and leaves and stems (23.7%).
Finally, the most represented terms among the 1,350 belonging to MF for plant organs were 'hydrolase activity' in roots (32.5%) and seeds (30.8%), 'oxidoreductase activity' (20.1%) in leaves and stems, 'nucleotide binding' in flowers (30.4%) and fruits (28.3%).
The most represented terms for the molecular function category were associated to protein and nucleotide binding and transcription factor activity, whereas the predominant terms for the biological process category were involved in common enzymatic processes such as "auxin biosynthetic process," "oxidation reduction," and "signal transduction".
Similar(54)
In the cellular compartments category, 'cell part' (29%) was the most represented term, followed by 'membrane-bounded organelle' (20%) and 'organelle part' (16%) (data not shown).
In the molecular function category, "binding" (41.8%) was the most dominant term, followed by "catalytic activity" (36.6%); in the cellular compartments category, "cell part" (42.91%) was the most represented term, followed by "membrane-bounded organelle" (29.34%) and "organelle part" (10.04%).
The most represented term in the 351-gene set is response to stress, which included 78 genes from the set (24.5%) and was significantly (p = 9.4 × 10−5) enriched with respect to the total of 26,184 genes (16.2%).
For the biological process category, response to salt stress and cadmium ion were the most highly represented terms (Fig. 1).
The three most significantly over represented terms were regulation of biological quality (GO 0065008), response to biotic stimulus (GOO 0009607) and ion transport (GO 0006811).
Related(15)
most represented principles
most represented classes
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most represented states
most represented occupations
most represented breeds
most represented allergens
most represented patients
most represented functions
most represented cis-elements
most represented families
most represented KOs
most represented pathways
most represented malignancies
most represented species
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