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The two most represented cis-elements were the TC-rich repeats (24) and G-Box (23).
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Ellipses represent transcription factors, boxes represent cis-elements.
Therefore, these predictions most likely represent cis-regulatory modules involved in tissue gene regulation.
The few high-scoring matches from PEP-CTERM-negative genomes may all be false-positives, as most lie within protein-coding regions of those genomes and are unlikely to represent cis-regulatory elements.
STAT is the most enriched cis-elements in the promoter regions of those differentially expressed genes.
Additionally, the most cis-elements were identified in GPGs.
In a majority of the promoters, most of the cis-elements are located within 1 kb upstream of the ATG sequence.
Based on this logic, we screened the promoters of 190 AM-induced genes for overrepresented sequences that may represent cis-acting regulatory promoter elements.
It is likely that the conserved genomic elements identified in this analysis represent bona fide cis-elements.
Overall DFR had the most occurrences of the cis-elements listed in Table 2 with a total of 26.
Nevertheless, our list of motifs up to now provides the most comprehensive analysis of cis-elements in a grass genome.
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