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Exact(29)
We have developed a method for analysing the apparent stability of conserved sites as more sequences are discovered and reported.
Each protein is grouped with all its BLAST hits and then iteratively grouped with their BLAST hits until no more sequences are added to the UPC.
The lack of Ariadne A genes in gymnosperms, if indeed confirmed when more sequences are available and not simply due to a lack of information for gymnosperm genomes, must be therefore be attributed to a subsequent loss.
If an e-value criteria of <10−15 against the P. infestans CDS [11] is used, more sequences are recovered (979 unitigs) but 20.3 and 29.1% of these sequences also have a hit against potato and tomato or Solanaceae ESTs, respectively (Figure 4b and Table 2).
The 13 polymorphic amino acid sites occurring in two or more sequences are of particular interest.
The alignments of two or more sequences are scored according to the number of common nucleotides.
Similar(30)
However, the difficulty in finding the similar regions between two or more sequences is very hard due to the size of the existing sequence involved.
Rarefaction analysis yielded an asymptotic curve at the distance level of 0.2, meaning that if more sequences were analyzed, new phyla would not have been detected (Figure 7A).
"In the last 10 weeks, more sequences were added to the GenBank database than in the first 10 years of genomics," reveals Robbins.
In a second analysis, only the 14 sites for which three or more sequences were available were used.
Two months after this initial annotation comparison, about 350 more sequences were indeed labeled as sHSP in UniProt.
Related(20)
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