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Because microarray platforms use their own element IDs rather than common gene IDs, two search tools were developed to determine the relationship between microarray elements and rice genes.
The global OPLS model describes a many-to-many relationship between microarray elements and weather parameters.
See Figure 4 for an overview of the microarray elements and the relation to the weather parameters.
This amounted to less than 0.3% of the analyzed microarray elements, and less than one half of the number changed due to the other staining methods tested.
The global OPLS model describes a many-to-many relationship between microarray elements and weather parameters, but OPLS could also be used to pinpoint the weather parameters that are most important for the regulation for a particular microarray element.
The nuID schema enables the data management system to report hybridizations, annotate microarray elements, and model the gene-to-probe bindings explicitly at the probe-level, and we believe it is ideally suited for labeling the identity of microarray probes.
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Two other inputs are a database of gene identifiers and their appropriate microarray element lookups and annotations, and a database of gene expression values for the given samples.
Users may choose between entering a list of IDs (genes or microarray elements) of interest and uploading a file to use these search tools.
In the first stage, global dye and microarray effects were removed across all microarray elements or cDNAs transcripts, and in the second-stage individual-study or meta-analyses were implemented.
The "Gene Expression Search" tool in ROAD provides a tabular list of microarray element IDs and of matching gene IDs from RGAP, RAP and KOME (Figure1b).
The 'Single-platform Microarray Element Search' and the 'Multiple-platform Microarray Element' search tools allow users to identify the specific platform probes that map to a common gene target.
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