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12284_2013_56_MOESM1_ESM.xlsx Additional file 1: Table S1: Summary of 983 Affymetrix microarray data points used in this study.
Collectively, microarray data points to a decrease in the recruitment of immune cells, particularly CD8+ cells, to the Shb +/− tumors as compared to wild type controls.
A total of 504 cDNA microarray data points of yeast whose expression changes are attributing to environmental stresses were collected [ 9].
As result, various repositories of transcriptome data are now available including NASCArrays, [ 5] GEO, [ 6] SMD, [ 7] ArrayExpress, [ 8] and AtGenExpress, [ 9- 11], which collectively provide 6,100 microarray data points (7 September 2011).
To accumulate transcriptome data, various data repositories are now available, including NASCArrays, GEO, SMD, ArrayExpress, and AtGenExpress, which collectively provide more than 4753 microarray data points (3 September 2009).
The two-factor ANOVA used in this study to determine the influence of AtNHX1 is considered a powerful tool for the analysis of microarray experiments with multiple factors [ 11], as it utilized all 48 microarray data points to distinguish between an effect of genotypes across all treatments (main effect) and a treatment-dependent effect of lines (genotype × treatment interaction).
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Our microarray data pointed out an increased level of BLM and RFC1 in the non-responding cervical cancers compared with the responding cancers.
This explains the lack of overexpression observed in microarray data and points to the need to further establish the mechanisms by which Ecd is overexpressed in breast cancer.
To ensure that the RNA-Seq data could be compared with the microarray data, time points were selected a subset of those in the previous microarray expression studies that covered 20 states of the three stages of the T. thermophila life cycle.
For microarray analysis, data points from technical replicate spots falling outside of mean ±1.2 times standard deviation were discarded for every gene.
On the basis of the gene-to-gene correlation coefficient calculated from 67 microarray hybridization data points, we performed a network-based analysis.
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