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As expected from the microarray data, location was again unimportant for transcription in individual cells, with only three transcribed genes (∼20%) being found at the subtelomeres.
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*values highlighted in bold have |FC| > 2 and p-value < 0.01 in the microarray data; a) Sub-cellular location was attained using Pedant Database (http://pedant.gsf.de).
Instead, our algorithm relies only on the microarray data to predict the locations of a sequence of interest.
A very recently published study took a fourth approach, analyzing phylogenetic conservation, in conjunction with motif searching and published microarray data to predict ACS locations [ 43].
In this paper, we propose a simple but reliable algorithm to predict the genomic location of insertion DNA sequences based on microarray data without using the prior knowledge about the location of mobile elements.
Next to the gene, blue line plots illustrate the methylation data for each probe location (Infinium HumanMethylation450 microarray data).
Another reason may be a site-specific batch effect since the allyl alcohol microarray data was generated at a different location than the acetaminophen and carbon tetrachloride microarray data.
SAMMD addresses these issues by providing a central location for S. aureus microarray data.
With alternative splicing in the picture, probe location clearly impacts interpretation of microarray data.
Human microarray platform, GPL1528; human HCC microarray data, GSE1898; mouse microarray platform, GPL1529; mouse HCC microarray data, GSE1897.
Saldana, A.J. Java Treeview - extensible visualization of microarray data.
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