Sentence examples for median read coverage from inspiring English sources

This correction is intended for regions of a genome with identical read depth [39], but since this requirement is not applicable to our case, we used the median read coverage per contig.

Subsequent normalization and analysis, with the exception of transcription stop site coverage analysis, was performed on median read coverage across 100 bp windows, sliding along each chromosome in 50 bp steps.

The resulting assembly contains 991.0 Mbp across 12,958 scaffolds with a scaffold N50 of 382kbp and a median read coverage of 6.5-fold.

G3 and L3-5 transcript models had similar median read coverage values of 4.4 and 3.7 FPKM, respectively (Additional file 1: Figure S3).

The median value of average target region read depth was 135.85, and STK11 had about half as much median read coverage compared with the rest of the target genes (76.8; Figure 1).

The mean read coverage of our event sequences ranges from 0.1285 to 2135, with a median of 33.15, a mean of 123.3 and a standard deviation of 245.7.

These results, in conjunction with the observation that the median exon-exon read coverage across all strains was ~7.5, led us to define a minimum read coverage threshold of 10.

The median read depth coverage of these sites was >12× (Supplementary Material, Table S11).

We next determined the evenness of transcript coverage by comparing the median coefficient of variation (CV) for the read coverage of the 1000 most highly expressed transcripts (Table  1).

After trimming 108 bp from the ends of each contig, where a reduction in mapped read coverage would be expected, the median coverage of mapped reads was 19× (mean = 18.94×; SD = 10.42).

The genome coverage is different for different library sizes and the median library sizes (400 bp and 500 bp) tend to have relatively higher genome coverage fraction while depth of read coverage is low.