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No other genetic mapping report of Eucalyptus mentions the frequency of microsatellite markers with null alleles.
Respectively, 480 and 26 of the selected WONA loci were from BES and gene sequencing, while all markers with null allele were from BES.
The proportion of markers with null effect frequently did not reach convergence, leading to poor results for Bayes Cπ in QTL detection.
He, Ho expected and observed heterozygosity (calculated using CERVUS v3.0) $, Markers with null alleles; null alleles were detectable by following their segregation through the pedigree.
Among the 116 markers with null alleles, 88, 82, 31 and 92 display null alleles for at least one accession within C. maxima, C. medica, C. reticulata and wild Citrus, respectively.
Segregation analysis was also used for disclosing the nature of some multi-locus markers, which had remained hidden by inspecting the 8.4 X genome assembly, and markers with null (non-amplified) alleles, which were both discarded.
Similar(53)
For some markers with high estimated null allele frequencies it was possible to identify where null alleles were segregating in the pedigree.
Considering all markers (with and without null alleles), the first category consisted of markers heterozygous in one parent and homozygous in the other (classified as < nn × np > or < lm × ll > in JoinMap).
In fact all six fully informative markers with one or more null alleles segregating could not be positioned on the consensus map.
In a locus-by-locus analysis, the markers with the highest frequencies of null alleles were SPS115 (9.7 %) and INRA063 (6.6 %) (see Additional file 2: Table S2).
Based on the fitted null distribution, SNP markers with FDR < 0.01 after we adjusted for multiple hypothesis testing were deemed significant (Benjamini and Hochberg 1995).
Related(18)
microsatellites with null
markers with absent
markers with zero
traces with null
markers with different
markers with permanent
markers with certain
markers with identical
markers with thin
markers with minor
markers with multiple
markers with sufficient
markers with black
markers with high
markers with tremendous
markers with adequate
markers with unfavorable
markers with deep
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