Sentence examples for many downstream analysis from inspiring English sources

As many downstream analysis tools are not capable of checking for low-quality reads, it is necessary to perform filtering and trimming tasks in advance to avoid drawing of wrong biological conclusions.

This was limiting because present versions of Cytoscape do not allow users to exchange node identifiers for node attributes, and many downstream analysis tools operate only on node identifiers.

In addition, many downstream analysis tools take as input single syntenic blocks only, requiring the global alignment to be exported into multiple alignment files in an external format such as Fasta or Phylip.

As many downstream analysis methods (such as gene clustering, disease classification and gene network reconstruction) require complete datasets, missing value estimation becomes an important pre-processing step in the microarray data analysis [ 11- 13].

While this can be often a desirable and/or tolerable consequence for many downstream analysis routines, the information loss can also negatively influence the outcome of certain applications, such as discovery of mutations (e.g. SNPs) or assemblies of repetitive genomic regions.

The relative abundance based on OTU number or taxonomy can then be used for many methods of downstream analysis to compare treatments, richness, and diversity.

For greater detail of sequence analysis methodology, we direct the reader to a recent review by Di Bella et al. 19 Many methods of downstream analysis have ecology origins and may be unfamiliar to animal scientists.

One has to decide if chasing differential splicing is worth the potential disadvantages of dealing with many false positives in the downstream analysis.

While many existing software packages for downstream analysis of genetic data are command line programs designed for UNIX or Linux, the software provided by Affymetrix employs a graphical user interface designed solely for Microsoft Windows.

However, this approach has some pitfalls: (1) when continuous methyl values are converted to discrete methyl status, information is lost; and (2) once a numeric coding is arrived at, many probes would be excluded from downstream analysis because their "epi-MAF" would be <0.05 (MAF, "minor allele frequency").

CTC were enriched in that fraction by depleting as many haematopoietic cells as necessary to allow downstream analysis (i.e., microscopic imaging).