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In both CT acquisition phases (EE, EI), lung parenchyma was manually delineated from the chest wall, PLEF, and mediastinal structures.
In a first step in the analysis of CT images (A), lung contours were manually delineated from chest wall, mediastinum and pleural effusion.
Tumor was manually delineated from the T2-weighted images and volume of the tumor was computed based on the segmentation.
Within each image, the lungs were manually delineated from the thoracic wall in a single region of interest.
They optimize a one-class SVM based on the area under receiver operator curve from 6000 training voxels manually delineated from 8 patients and then tested on manually delineated voxels from 8 new patients.
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The posterior limb of the internal capsule (PLIC) was manually delineated bilaterally from the level of the anterior commissure to the base of the corona radiata in standard space.
In our case, the ground truth consists in a collection of contours manually delineated by an expert from HUVA.
Percentage mean difference (A) or logarithmically transformed mean difference (B) between maximum tumour diameters derived from both manually delineated tumours on CT and several (semi- automatic PET-basemi- automatic methods and corresponding data from pathology.
Once the regions of interest were manually delineated, a surface was generated from the binary segmentation, smoothed via Laplacian smoothing, and exported in STL format from BRAINS2.
The boundaries of the mitochondria were manually delineated with the Metamorph drawing tool from Mitochondria-labeled cells and the number of mitochondria was counted from each cell.
A statistical model of prostate is estimated from training set of manually delineated images.
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