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We're responsible for creating and archiving and maintaining and providing to the world over the Internet some of the major biological databases: genome sequence databases, protein structure databases and others.
Assuming funding can be found, there should be a steady demand for data curators and database programmers to help develop and maintain the three major biological databases kept by EBI for use by the worldwide scientific community.
Automating steps in the manual data entry process can improve curation efforts for major biological databases.
The PubMed ID is hyperlinked to its source page at NCBI, and each protein is ultimately hyperlinked to major biological databases like Uniprot and Entrez Gene.
BDE has been developed with the objective of providing a single platform for customizable data extraction from some of the major biological databases.
First, contigs were blasted against all the genome sequences in major biological databases such as Phytozome [ 13] and KOG (euKaryotic Orthologous Group) [ 14] with a cutoff e-value of 10-5.
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In this article, we describe an experiment aimed at verifying whether a text-mining tool capable of extracting meaningful relationships among domain entities can be successfully integrated into the curation workflow of a major biological database.
Database URL: www.tagtog.net, www.flybase.org A major challenge facing biological databases today is the increase in data available for curation.
The major objectives of biological databases are not only to store, organize and share data in a structured and searchable manner with the aim to facilitate data retrieval and visualization for humans, but also to provide web application programming interfaces (APIs) for computers to exchange and integrate data from various database resources in an automated manner.
For the current implementation, we have extracted seven features from two major sources of scientific literature, and online biological databases.
Hence, developing biological databases by curating literature has been highlighted as a major research topic (1, 2).
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