Lower identity values were observed relating the query sequences to propane monooxygenase gene from the genus Mycobacterium.
Additionally, the 4 ALV-B strains have high homology with the prototype strain (RAV-2), from 99.1 to 99.4%, but they have slightly lower identity with Schmidt-Ruppin B and Prague subgroup B, from 93.3 to 98.4%.
Phylogenetic analysis of R7 alkB gene cluster showed a significant similarity with the homologous system of R. opacus B4 (Sameshima et al., [2008]) and a lower identity with Rhodococcus sp. BCP1 (Cappelletti et al., [2011]).
(CD-HIT can cluster at lower identity thresholds as well, but not as quickly).
In general, the lower identity reads follow the taxonomic abundance distribution of mapped high-identity reads.
In contrast, TLR2 and TLR4 have much lower identity with each other and other TLRs (range, 20% 30%).
Other CAMP factor homologs (1, 3 and 5) show lower identity in amino acid sequences to the GBS CAMP factor.
This was a higher identity percentage than in 2003 2004 (93.2%) but a lower identity percentage than in 2004 05 (97.1%) (Table 3).
Moreover, each subunit showed >57% identity with the corresponding subunit in human, yeast and rice, with the exception of the θ subunit, which showed somewhat lower identity (≥45%).
As expected, the selected macaque VHs or VLs showed a slightly lower identity to human germline genes as the human variable domains.
In contrast, the second DNA region contains only seven ORFs (Oant_4564 to Oant_4562, Oant_4559 to Oant_4557 and Oant_4555) and the predicted proteins show a lower identity (from 18.1% to 35.1%) with the corresponding B. abortus VirB products.
