Sentence examples for by different sequencing platforms from inspiring English sources

The use of a simple pipeline, compatible with outputs generated by different sequencing platforms, also allowed treating the data in a uniform manner, thus eliminating possible biases deriving from machine-specific software or algorithms.

It supports both short and long reads produced by different sequencing platforms.

Summary: The Sequence Alignment/Map (SAM) format is a generic alignment format for storing read alignments against reference sequences, supporting short and long reads (up to 128 Mbp) produced by different sequencing platforms.

The outputs generated by different sequencing platforms are subjected to multiple analytical steps that usually start with sequence assembly or reference-based mapping and finish with simultaneous comparisons of multiple genomes and data visualisation.

Therefore, we reannotated all miRNA arms as "5p" or "3p" (supplementary table S2 and S3, Supplementary Material online; van Kouwenhove et al. 2011) for subsequent analyses and investigated 5p/3p read count ratios for C. elegans and P. pacificus miRNAs profiled from mixed stages by different sequencing platforms (supplementary table S4, Supplementary Material online).

In Phase I of the 1000 Genomes Project, genotypes were called using a combination of different approaches: first, primary call sets were independently generated by different centers with different sequencing platforms, alignment, and variant calling methods; then, a consensus SNP call set was generated and made publicly available (The 1000 Genomes Project Consortium 2012).

The error characteristics of different sequencing platforms are approximated by different error models.

This figure visualizes how the quality of two exomes of the same individual that were generated on two different sequencing platforms and processed by different bioinformatics pipelines may be interpreted at a glance.

The 1000 Genomes Project data were generated by various sequencing centers, which relied on different sequencing platforms, read lengths, aligners and variant and genotype calling algorithms (The 1000 Genomes Project Consortium 2012), creating challenges to an overall assessment of data reliability.

Indeed, different sequencing platforms are each characterized by their specific false-positive and false-negative variant detection rates.

Finally, the sequencing data in this paper was generated on two different sequencing platforms, using two separate library preparation techniques by two independent laboratories.