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Exact(5)
This PAM2 motif was initially identified in Paip1 (PABP-interacting protein 1), Paip2 and eukaryotic Release Factor 3 (eRF3) [7].
No TATA-box motif was initially discovered in Brassicacea SSP gene promoters.
A "G-P-C-R-P" motif was initially reported for F. graminearum in the Supplementary Material of Ma et al.[ 36], however it has not been functionally characterized.
A consensus CgrA binding motif was initially searched among a group of 28 IP peaks that are located adjacent to genes that also exhibit regulation by CgrA as based on RNA-Seq analysis.
The structure of one LysM motif was initially solved by NMR for the Escherichia coli membrane-bound murein lytic transglycosylase-D (MltD; protein data bank (PDB) entry 1EOG; Bateman and Bycroft 2000).
Similar(55)
We assume that the motif is initially at equilibrium with zero input so that in the absence of basal transcription none of the proteins in the motif are initially expressed.
These motifs were initially discarded from the automatic procedure due to the stringent parameterization to retain only the highest-scoring motifs for the specified position.
Using the MEME suite [ 71] and BEDTools [ 72], Pumilio, Nova, and PTB binding motifs were initially searched across the genome and extracted through 1000 nt of DSS (Additional file 16: Figure S5A-C).
BH1 and BH2 motifs were initially identified in Bcl-2 and the BH3 motif in Bak, with a fourth poorly conserved motif, BH4, proposed in the N-terminal region of Bcl-2 and the closely related Bcl-xL and Bcl-w.
The SH3-binding domain of the R. norvegicus Mob3 is a non-canonical PxxDY motif, that was initially identified as a binding motif of the Eps8 SH3-domain (Mongiovi et al. 1999).
Another highly conserved sequence in VDAC is the glycine-leucine-lysine (GLK) motif, which was initially suggested to be an ATP binding site [ 66]; replacement of the lysine residue with glutamate leads to porins that retain ATP binding [ 10], but are cation-selective, rather than anion selective in artificial bilayers [ 10, 14].
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