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The motifs enriched in the OsEUL regulons are annotated according to the associated transcription factor or motif name.
A motif name starting with M is from TRANSFAC, and with N from de novo discovery.
Here, "10ATCT" instead of AP4/AML (motif ID 10) was written owing to the long length of the motif name.
We denote a feature by the concatenation of main factor names and the motif name of a cofactor with dot as separator.
aFunction derived from B. cenocepacia J2315 [ 34]. b cep box motif name from Chambers et al. 2006 [ 28] or genomic context of downstream.
For example, the feature Smad1.STAT3.M00052_NFKB involves the main factors Smad1 and STAT3 and a cofactor whose motif name is M00052_NFKB in TRANSFAC.
Similar(50)
In higher plants, a homeodomain superfamily with a closely linked leucine zipper motif, named HD-Zip, was first discovered in Arabidopsis thaliana (Ruberti et al. 1991).
We have designed a structure in which some residues of the APP PPII helix are replaced by a sequence motif, named RP1, which interacts with the SH3 domain of the Abelson tyrosine kinase (Abl-SH3).
ARM-repeats consist of a ∼42-amino acid structurally conserved repeating motif named after the Drosophila segment polarity gene Armadillo (mammalian homologue, β-catenin) [7], [8].
Two motifs important for protein-protein interactions and that regulate 4E-BP1 phosphorylatheN-terminaleRAIPal RAIP motif (named according to its amino acid sequence) [39] and the C-terminal TOS site (TOR Signaling) [40], are also present.
OsTB1 encodes a putative transcription factor carrying a basic helix-loop-helix type of DNA-binding motif (named the TCP domain) and functions as a negative regulator of the outgrowth of tillering buds [35].
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