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SRK and KVDP performed promoter motif analysis.
Fig. 4 Distribution and motif analysis of lysine acetylation sites.
This possibility was supported by our protein motif analysis [44].
Motif analysis was performed with the Multiple Em for Motif Elicitation (MEME) motif search tool.
Differences between human Hop (HsHop) and PfHop were identified by motif analysis.
Shared motif analysis was performed using the 12 putative OsGLP promoter sequences from the Nipponbare reference genome sequence.
FIRE was used for motif analysis [38].
The number of motifs identified varied greatly between the de novo motif analysis tool (Table 1).
Phylogenetically conserved sequence between Human (Hg18) and Mouse was selected for motif analysis.
For purposes of motif analysis (see below), upstream promoter regions were defined relative to TSS.
We are grateful to Eran Eden for helpful discussion on the sequence motif analysis.
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