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Exact(5)
At least two reports had identified dinucleotide repeats as the most prevalent repeat class [ 48, 49].
However, in oil palm, the dinucleotide repeats have been identified as the most prevalent repeat class in the EST data.
Interestingly, direct survey of the adjacent sequences of all 22q11.2 SD subunits also found that Alu was the most prevalent repeat, present in 32% of the 523 subunits.
For each of the genomes (with the exception of tetraodon), the most prevalent repeat base length is 4, with roughly twice as many tandem repeats as triplet base lengths.
The >3300 TRs of N. vectensis were statistically analyzed to determine the most prevalent repeat properties in terms of number of TR units, their length, and the overall regions they occupy.
Similar(54)
The most prevalent repeats are the Alu family of SINEs, which comprise approximately 10% of the human genome.
Among the SSR with tandem repeats, SSRs with six tandem repeats (5,657, 26.53%) were most prevalent, followed by five tandem repeats (3,988, 18.71%), seven tandem repeats (3,466, 16.26%), and four tandem repeats (3,356, 15.74%) (Table 4).
In contrast with dinucleotide abundance levels, the most prevalent tri- and tetranucleotide repeats of X. tropicalis, AAT and AGAT, are consistent with the results in some other vertebrates including X. laevis, although differing from those seen in some mammalian species (Edwards et al. 1998; Toth et al. 2000).
Among the P. axillaris SSRs, ~42 % are di-nucleotide repeats, of which AG/CT is most prevalent (43 %) and ~53 % are tri-nucleotide repeats with AAG/CTT repeats present at the highest frequency (~17.5 %; Table 8).>> A total of 2949 primer pairs were developed from 3027 unigenes (Additional file 6: Dataset S5).
The sequence with four (Ala 3Gly repeats was most prevalent, with 166 occurrences (78%), in close agreement with the situation for wt alleles in other mammals (Figure 5, Table 4).
WD40 repeats, the most prevalent additional domains identified in 6 cyanobacterial species, replicate for 7 to 15 copies in a single metacaspase protein.
Related(20)
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