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Exact(7)
AC was the most frequent dinucleotide motif found in the studied species.
As it has been also observed in T. brucei, the second most frequent dinucleotide at splice site is GG.
Overall, (AT) n, (AG) n and (CT) n were the three most frequent dinucleotide microsatellite motifs found in the five genomes considered.
Reflecting this, CA is the most frequent dinucleotide spanning the TSS (49.1% of tight promoters), followed by TA, TG and CG (16.0%, 14.4% and 12.7%).
The most frequent dinucleotide motif was (AT/AT n with a frequency of 166 out of 590 followed by (GA/TC)n, (AG/CT n, and (TA/TA n (Fig. 3b).
The distribution of SSRs in the lotus genome is different from those observed in humans and Drosophila, in which AC is the most frequent dinucleotide repeat motif, followed by AT and AG [ 18].
Similar(53)
The most frequent dinucleotides were AT, followed by AG repeats.
Genomic micromatches not fulfilling a simple low complexity filter were discarded: 1) all four bases had to be present at least once, and 2) at most 11 of the three most frequent dinucleotides in the sequence were allowed.
AG and AC motifs occurred frequently in dinucleotide SSRs of all sequence origins, although AT dinucleotides were most frequent among BSSRs.
However, trinucleotide microsatellites (followed by mononucleotides) were the most common motifs in S. commune and C. cinereus, while trinucleotide microsatellites (followed by dinucleotides) were most frequent in P. ostreatus.
This was in agreement with the genic-SSR distribution reported in peach, pumpkin, spruce, coffee and kiwifruit, where dinucleotide repeats are most frequent [ 39- 42].
Related(20)
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