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Interestingly, the cecum is characterized by the most complex microbial community dominated by the phyla Firmicutes, Bacteroidetes, Actinobacteria and Proteobacteria [28].
The rhizosphere is arguably the most complex microbial habitat on earth, comprising an integrated network of plant roots, soil and a diverse microbial consortium of bacteria, archaea, viruses, and microeukaryotes.
Renewed and intensified efforts are required to reveal fundamental deterministic patterns in the most complex microbial communities.
While soils seem to harbor the most complex microbial communities, these considerations apply to many other environments as well, like e.g. oceans and sediments.
The fermentative forestomach of ruminant animals, known as the reticulo-rumen, is one of the most complex microbial ecosystems investigated via metagenomic studies [ 8].
In the first hours of life, the germ-free gastrointestinal tract of newborns is colonized by microorganisms deriving from the mother and from the environment, with the establishment of a microbial community that will evolve into one of the most complex microbial ecosystems [ 1].
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Clostridium sp., Clostridium sulfidigenes, Clostridium indolis, Achromobacter sp., Bacillus cereus, B. aerius, Pseudomonas aeruginosa, Arcobacter sp., A. vitis, uncultured Acidobacteria bacteria and the other uncultured bacteria co-built up the most complex structure of microbial community.
Of the various niches under investigation, the human gut houses the most complex and abundant microbial community and is an arena for important host microbial interactions that have both local and systemic impact.
If the ITS2 gene can serve as a powerful DNA barcode, then this approach has the potential to help address some of the most complex problems in microbial ecology and diversity including analyses of community structure, the paradox of plankton, issues of dispersal and the nature or existence of biogeographical patterns among algal microbes.
Soil ecosystems harbor the most complex prokaryotic and eukaryotic microbial communities on Earth.
As the most genetically diverse and functionally complex microbial ecosystem of the human body the intestinal microbiota has become one of the major areas of interest in microbial ecology [ 1].
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