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Exact(7)
It can be argued that more distant sequences will not be found when searching for such sequences in other species with the same cutoff value of 10-12.
More distant sequences are found in species within the superfamily Chrysomeloidea, which comprises bruchids (e.g. Anophophora), or within more distantly related beetles (e.g. Blackburnia) or crickets (e.g. Gryllus).
In Seemann et al. (2010), the input alignment consisted of more distant sequences, which reduced the reliability of this stem and made the interaction site accessible.
This is likely because we searched more distant sequences surrounding editing targets in a larger number of editing sites of various types of RNAs, whereas most previous studies focused on immediately adjacent sequences on fewer targets.
The rest of the tree was composed of at least four branches with more distant sequences of the CYP71C subfamily from maize, B. distachyon, S. italica, S. bicolor and O. sativa.
In the process of cleaning up the (already sparse) bacterial data, we took this into account by removing more distant sequences to keep the balance of accurate assignment and covariance patterns of base pairs.
Similar(53)
For a more distant sequence comparison, only 34.6% and 32.2% of the Ks3 mtDNA matched those of maize and rice with an identity of more than 78%, respectively.
At the sequence level, the TEM and SHV β-lactamase families share an identity of 67%, while the CTX-M family is more distant (sequence identity of 40% to TEM and SHV) [ 4].
One half was purified as described above, and the other was purified using AMPure XP beads (Beckman Coulter, Indianapolis, IN), to provide size-selection for larger fragments corresponding to tertiary proximities between more distant sequence positions.
Second, information from more-distant sequences, both non-alignable isolated sequences and clades of alignable sequences, is incorporated so as to further increase sensitivity, without an accompanying increase in false predictions.
Similar conservations extend to sequences from the two other groups (represented by Hs Piwi4 and Ce Ppw2) as well as to the more distant prokaryotic sequences of the structures, supporting the final multiple sequence alignment.
Related(20)
more ancient sequences
more distant operations
more distant images
more distal sequences
more distant segments
more distant particles
more distant settlements
more distant zones
more repetitive sequences
more distant populations
more distant quarters
more distant levels
more distant horizons
more distant synthesizers
more distant applications
more distant neighbours
more distant relatives
more distant areas
more distant parallels
more distant environments
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