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BamHI BESs contained more repetitive sequences than EcoRI BESs.
It showed the potential to assemble more complex genomes with multiple chromosomes containing more repetitive sequences.
In general, sex chromosome BAC clones have three times more repetitive sequences (Table 1).
pullulans contains more repetitive sequences than the other A. pullulans varieties.
Compared to the rest of the genome, nearly every breakpoint region contains significantly more repetitive sequences (up to 90%).
Such events might have occurred in M. acuminata, with a larger genome [ 62, 63] and more repetitive sequences than M. balbisiana[ 90].
Similar(45)
However, the MSY of papaya is pericentromeric and even the X counterpart has more repetitive sequence than the genome average [ 29, 30], thus the WGS sequence could have been underrepresented in this region.
Alternatively, there may be more repetitive DNA sequences in macrochromosomes, and the repetitive sequences might not contain the BseXI recognition site.
The discrepancies between the abundance of specific motifs in non-redundant loci versus genomic microsatellites may result from the appearance of AC or AG repeat strings embedded within more complex repetitive sequences.
We estimate that the soybean genome contains a minimum of just over 8,000 transposable elements of types named and present in the TIGR repeat database; many more "unclassified repetitive" sequences that have similarity to sequences in this dataset (at least 42,000) are present.
All methods agree that the copperhead has considerably more detectable repetitive sequence than the python, and a large part of this repetitive fraction in both species arises from recognizable TEs.
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