Sentence examples for minimum atom distance from inspiring English sources

This was done using both the measurements of residue Accessible Surface Area (ASA) and the minimum atom distance to the antibody.

Residue pairs with an 8 Å minimum atom distance between the residues are defined as true positive contacts, and precision = TP/ TP + FP).

In total 80% of the interacting residue pairs in the known 3D structure parts of the synthase complex (7 pairs of subunits) are correctly predicted (threshold: 10 Å minimum atom distance between two residues).

For the definition of surrounding area, we continued to use distance-based method: antigen residues with minimum atom distance to binding antibody less than 6Å, that are not B-cell epitope residues, were incorporated as components of the surrounding area.

Inter- and intra-protein crystal structure contacts at minimum atom distance cutoffs of 5/8/12 Å are shown as dark/middle/light gray dots, respectively; missing data in the crystal structure as shaded blue rectangles.

Euclidean distance was calculated between atom a i and a j with their coordinates a i(x i, y i, z i) and a j(x j, y j, z j) in the PDB structure data, d i j = x i - x j 2 + y i - y j 2 + z i - z j 2 Antigen residues r i whose minimum atom distance to the binding antibody is less than 4Å were also incorporated in epitope.

Here, the ( min ) expression selects the atom detected in the noisy (or denoised) image, which is nearest to the one detected in the ground truth and the comparison with Δ c min ensures that atoms are only matched if their distance is less than half the minimum inter-atomic distance.

As in the definition of the detection fraction (26), here the ( min ) expression selects the nearest atom and the thresholding operator ( {Y}_{frac{1}{2}varDelta {c}_{min }} ) ensures that atoms are only matched if their distance is less than half the minimum inter-atomic distance.

A pairwise distance calculation between the atoms of the environment generates an atom distance matrix, which accounts for a wide spectrum of distances, from short to long range.

A cumulative distribution is obtained from an atom distance matrix, which is a pairwise distance calculation between atoms of the environment.

The distance between two amino acids was taken to be the minimum of the atomic distances between the two residues: where i and j represent all atoms in amino acids 1 and 2, respectively.