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One approach is to prohibit the storing of "small" transformations (e.g. by restricting the minimum atom count in the fragment) and to accept only the larger ones, which include more context information.
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A cluster analysis of drugs based on 7 chemical descriptors (molecular weight, minimum projection area, logP, logD7.3, log N pKa), polar surface area, and aromatic atom count) was performed (Figure 6).
atom count.
heavy atom count.
Atom Count Number of atoms in a molecule.
HAC = heavy atom count, all non-hydrogen atoms.
We compare 3DZD, USR, MACCS, and the atom count method.
However, the atom count (AC), hydrogen count or molecular weight can generate analog metrics.
Aromatic Atom Count Number of aromatic atoms in a given molecule.
If the two molecules have identical atom count and bond count or their bond count and atom count are both dissimilar, then the native MCS module of the CDK (CDKMCS) is used.
In addition, we employ a method which simply considers the number of atoms in the molecule (the atom count method).
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